PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_3E4E3BEFC.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 790aa    MW: 87907.9 Da    PI: 7.7566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_3E4E3BEFC.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18287386198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++
  Traes_2DS_3E4E3BEFC.2 287 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSR 373
                            89**************************555566778***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  e++lv+++++
  Traes_2DS_3E4E3BEFC.2 374 ID-PEGKLVMGFRK 386
                            87.67767777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-31283393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-21284390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-23285386No hitNo description
PROSITE profilePS5086311.265287388IPR003340B3 DNA binding domain
PfamPF023622.0E-15287386IPR003340B3 DNA binding domain
SMARTSM010199.3E-22287387IPR003340B3 DNA binding domain
PROSITE profilePS5105014.033543593IPR011124Zinc finger, CW-type
PfamPF074961.6E-10548590IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MAPSQMWSTP TVHMPQNVAD RKDSYVKSWR PPTGQISSQW RQNHQLWNMS TIQADLQQRL  60
AYEFDRPSGS EKLPPGRTFI HAQEKKSDDM HDRPTTPAGM GQIIRDRYAN GLGQQTSMDP  120
THSSTPYQRE GPNPNSLHDP SHHVGESDPL SSRKGIISDG GSTVSTGFKL DSHHPSILKD  180
DAASTLPTMG GYTITNYPPV PGRSDHLRII PNNPQQPPTT VPLSVVQKQF YSHSVIEPNY  240
QAQFRNGKPR MDPKARSELL PRYWPRITDK ELQHLSGDSN SVITPLFEKM LSASDAGRIG  300
RLVLPKKCAE AYFPPISQPE GLPLKVQDAS GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  360
MHLQAGDTVS FSRIDPEGKL VMGFRKTKTQ EQIFRQEEPT KPANAAPNLP DVNINVTAPD  420
SSPNSSLVRP NKVNTDNKDS SPVEQAASKI DKGGVAQKEG PGTVRTSPGP VKRKATSIGP  480
KIKRFRIDNE ESMELKITWE EAQELLRPPL KAPSVVIVDG HEFEEYEEPP VLGRKTYFVT  540
DQSGENHQWA QCEDCSKWRK LPIDALLPSK WTCSDNKWDP ERMTCVSPQE ASMEELAELI  600
PIKAGAAKKA KLRMDTDSID VSDGLDTLAN LAILGEGESL PSQPTTKHPR HRPGCSCIVC  660
IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL MLRREKRASE KESEEPPRKK EQGQSSESPQ  720
DPLLASTSPT STPQKVNGNG DDAEEAVEHS MASSPMKNQI DLNIQPERED EQSPKSDAVG  780
AMRLPRENAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1328637313102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236989.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLW5C4F80.0W5C4F8_WHEAT; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-143HSI2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]